Molecular characterization of Klebsiella pneumoniae associated with Thalassemia in Thi-Qar Governorate

Authors

  • Rasha Joudah University of Thi-Qar
  • Saad Hamim

DOI:

https://doi.org/10.32792/utq/utjsci/v10i1.1052

Keywords:

Thalassemia, Gene sequencing, phylogenic tree

Abstract

Klebsiella pneumoniae is a gram-negative, aerobic, non-motile bacilli and is a common cause of a wide range of infections in humans, Klebsiella spp. as a major causative bacteria in Thalassemia patient. The present study aimed to shed light on the supposed  role of bacterial infection in Thalassemia patients during the period of from August 2022 to December 2023 in Genetic Blood Diseases/Thi-Qar Governorate. Forty blood sample were collected from all patients and subjected to Conventional Polymerase Chain Reaction assay by using the Universal gene. Nine PCR product were selected and subjected to partial DNA sequencing for the 16S rRNA gene to follow up their possible relationship between them and what recorded globally in Gene bank.                       The results revealed that 9/40(25%) isolates were                     K. pneumoniae. PCR product of 16SrRNA registered in Gene bank under the official accession numbers of OQ928953.1,OQ929666.1,OQ928950.1,OQ929250.1,OQ927231.1,OQ928942.1,OQ927249.1,OQ927229.1 and    OQ927253.1).                                                                     The phylogenetic tree that was constructed by MEGA-10 software showed that there were different molecular relationships among the local K. pneumonia  isolates with analogous ones around the world.

References

M.R. El-Shanshory, L. M. Sherief, H. M. Hassab, S. M. Ragab, S. Yahia, A. K. Mansour, & S. M. Saied, ''Prevalence of iron deficiency anemia and beta thalassemia carriers among relatives of beta thalassemia patients in Nile Delta region, Egypt: a multicenter study'', Journal of the Egyptian Public Health Association, 96, 1-8, 2021.

A. M. Mohammed, ''Serum levels of lipid and lipoproteins in patients with beta-thalassemia in Amara S. Iraq'', University of Thi-Qar Journal of Science, 1(3), 3-11, 2009.

S. A. Patel, A. M. Siddiqui, & I. Kareem, ''Correlative study of serum bilirubin and liver enzymes with serum ferritin in beta thalassaemia major'', IOSR Journal of Dentaland Medical Sciences, 17(2), 62-67‏, 2018.

D. K. Al-Moussawi, ''Correlation of HCV Infection and Creatinine Levels in Thalassemia Patients'', University of Thi-Qar Journal of Science, 9(2), 80-83, ‏2022.

S. R. Ali, S. S. Sinthee, M. R. Islam, & A. S. Sarwar, ''Clinical and molecular studies on thalassemia'', Int J Cur Res Rev, 10(4), 34-39, ‏2018.

O. M. Hamed, R. A. Al-Taii, & M. H. Jankeer, ''Biochemical and Genetic Study in Blood of β–Thalassemia Children in Mosul City, Iraq,'' Iraqi Journal of Science, 2501-2508, 2021.

A. A. Yasir, ''Phylogenetic Groups of Escherichia coli Strains from Urinary Tract Infection of Thalassemic Patients in Thi-Qar'', M.Sc. Thesis, College of Science / Thi-Qar University, 2020.

F. M. Alzahrani, & S. Sattar Shaikh, ''Acinetobacter baumannii infection in transfusion dependent thalassemia patients with sepsis'', BioMed Research International, 2017.

S. Shang, Z. Chen, and X. Yu, ''Detection of bacterial DNA by PCR and reverse hybridization in the 16S rRNA gene with particular reference to neonatal septicemia'', Acta Paediatrica, 90(2), 179-183, 2001.

A. Fernández-Olmos, M. I. Morosini, A. Lamas, L. Máiz, and R. Cantón, '' Maldi-Tof MS improves routine identification of non-fermenting Gram negative isolates from cystic fibrosis patients''. J. Cystic Fibros., 11(4): 59-62, 2012.

S. Kumar, G. Stecher, M. Li, C. Knyaz, & K. Tamura, ''MEGA X: molecular evolutionary genetics analysis across computing platforms'', Molecular biology and evolution, 35(6), 1547, 2018

E. F. DeLong, ''Archaea in coastal marine environments'', Proceedings of the National Academy of Sciences, 89(12), 5685-5689,1992.

B. J. Al-Badry, ''Prevalence of anti-HBV antibodies in multi-transfused patients with thalassemia at Thi-Qar province'', University of Thi-Qar Journal of Science, 4(3), 14-17, 2014.

J. M. Sheen, F. J. Lin, Y. H. Yang, & K. C. Kuo, ''Increased non-typhoidal Salmonella hospitalizations in transfusion-naïve thalassemia children: a nationwide population-based cohort study'', Pediatric research, 91(7), 1858-1863, ‏2022.

B. J. Badry, A. A. Hussin, I.N. Abid, & A. Sh, ''Bacterial Infections in Thalassemia Patients at Thi-Qar Province/South Iraq'', American Scientific Research Journal for Engineering, Technology, and Sciences , 19(1), 199-205, 2016.

W. Sakran, C. Levin, Y. Kenes, R. Colodner, & A. Koren, ''Clinical spectrum of serious bacterial infections among splenectomized patients with hemoglobinopathies in Israel a 37-year follow-up study'', Infection, 40, 35-39, 2012.

G. Rahav, V. Volach, M. Shapiro, D. Rund, E. A. Rachmilewitz, & A. Goldfarb, ''Severe infections in thalassaemic patients: prevalence and predisposing factors''. British journal of haematology, 133(6), 667-674, ‏2006.

S. S. Hamim, ''Amplification and sequencing of hla and sea genes in Staphylococcus aureus isolated from outpatients in Nassyriah City,'' Journal of College of Education for pure sciences, 7(2), 192-200, ‏2017.

A. Pishtiwan, & K. Khadija, ''Molecular identification of clinical microbes in thalassemia patients using 16S rRNA gene sequencing'', Applied Ecology and Environmental Research, 17(6), 13135-13146, 2019.

T. Miyoshi, T. Iwatsuki, & T. Naganuma, ''Phylogenetic characterization of 16S rRNA gene clones from deep-groundwater microorganisms that pass through 0.2-micrometer-pore-sizefilters'', Applied and environmental microbiology, 71(2), 1084-1088,‏ 2005

S. A. Barghouthi, ''A universal method for the identification of bacteria based on general PCR primers'', Indian journal of microbiology, 51, 430-444, ‏2011.

K. Tamura, G. Stecher, D. Peterson, A.Filipski, & S. Kumar, ''MEGA6: molecular evolutionary genetics analysis version 6.0'', Molecular biology and evolution, 30(12), 2725-2729, ‏2013.

A. R. Ahmed & S. S. Hamim, ''Phylogenetic Profile of Staphylococcus aureus mec A and ICA a Genes Associated with UTI Patients'', Indian Journal of Public Health Research & Development, 11(2), 1169-1174, 2020.

M. G. Hassan, Z. R. Hassan, S. S. Hamim, M. O. Abdel-Monem, S. A. Abo-Elmaaty, ''Antimicrobial and antibiofilm activity of Streptomyces sp.AS5 against Klebsiella pneumonia and Escherichia coli'', Chin J Ind Hyg Occup Dis, 13(40), 33-41, 2022.

S. S. Hamim, ''Molecular characterization of mecA gene in Methicillin-Resistant Staphylococcus aureus'', University of Thi-Qar Journal of Science, 6(1), 25-29, 2016.

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Published

2023-06-28

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Molecular characterization of Klebsiella pneumoniae associated with Thalassemia in Thi-Qar Governorate. (2023). University of Thi-Qar Journal of Science, 10(1), 158-161. https://doi.org/10.32792/utq/utjsci/v10i1.1052